rs230785697 SNP Detail

Summary

• ID
  rs230785697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44882960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT GCGACTAACA GTGGAATGGT
  Y
  GTGACTCGGG AGTGCTTGTT TTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324330603	CHEV_13_44824853	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230785697					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44882960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5525	CpG island 5525	within coordinates
Gm60383	predicted gene, 60383	within coordinates
Jarid2	jumonji and AT-rich interaction domain containing 2	within coordinates
Rr369688	regulatory region 369688	1123 bp upstream
Rr403743	regulatory region 403743	1604 bp upstream
Rr478586	regulatory region 478586	within coordinates
Rr478587	regulatory region 478587	607 bp proximal
Rr478588	regulatory region 478588	1715 bp proximal
Tssr119535	transcription start site region 119535	38 bp upstream
Tssr119536	transcription start site region 119536	116 bp upstream
Tssr119537	transcription start site region 119537	155 bp upstream
Tssr119538	transcription start site region 119538	310 bp upstream
Tssr119539	transcription start site region 119539	1110 bp upstream
Tssr119540	transcription start site region 119540	1242 bp upstream
Tssr119541	transcription start site region 119541	1397 bp upstream
Tssr119542	transcription start site region 119542	1535 bp upstream
Tssr119543	transcription start site region 119543	1781 bp upstream
Tssr119544	transcription start site region 119544	1797 bp upstream
Tssr119545	transcription start site region 119545	1841 bp upstream
Tssr119546	transcription start site region 119546	1869 bp upstream