rs230787300 SNP Detail

Summary

• ID
  rs230787300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69492209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGGGTC AAGGACATTC
  CAGAAGCATC CACAGGAGAG TGTGGGCGGG TGGGGGTGGG GAGCCTCAGG TTTTGTTGAT
  CCGGAGTTTG AAGGCCACAC GGCCAGCGAA CTTGTCCCGC TCATCGTCTG TGGCAATATT
  GGCAGCGTTG ATGCGGCATT CAACATTCAC CTCCACGTTG GGGGTCACAT TCAGGAACTT
  Y
  ACAGCCACCA AAGGCTGAGT ATAGTTTACC TGGGCCAGGA GAAGAAAAAA ACGTAAGCCT
  CTGGTACCTT GGCGTCTTTC CCAAGAACAC CATTTTTTCA TTCAGGAGCC ACCGTCAAGG
  ACCTTCCGAG GTGGGACTTA CATGGAACTT TTTGCCATAG TAGGGAAAGT ACATCAGATC
  AATGCTGCCA TTAGCAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787312	MGP_WTSI_11_69414885	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230787300					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787312	MGP_WTSI_11_69414885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69492209 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm72066	predicted gene, 72066			within coordinates
Rr386229	regulatory region 386229			within coordinates
Rr450033	regulatory region 450033			1644 bp distal
Rr450034	regulatory region 450034			1773 bp distal
Rr450035	regulatory region 450035			721 bp distal
Tssr3544	transcription start site region 3544			679 bp upstream
Tssr102487	transcription start site region 102487			1343 bp downstream
Tssr102488	transcription start site region 102488			180 bp downstream
Tssr102489	transcription start site region 102489			134 bp downstream
Tssr108712	transcription start site region 108712			1365 bp upstream
Tssr108713	transcription start site region 108713			1214 bp upstream
Tssr108714	transcription start site region 108714			1146 bp upstream
Tssr108715	transcription start site region 108715			1112 bp upstream
Tssr108716	transcription start site region 108716			808 bp upstream
Tssr108717	transcription start site region 108717			794 bp upstream
Tssr108718	transcription start site region 108718			730 bp upstream
Tssr108719	transcription start site region 108719			728 bp upstream
Tssr108720	transcription start site region 108720			712 bp upstream
Tssr108721	transcription start site region 108721			703 bp upstream
Tssr108722	transcription start site region 108722			625 bp upstream
Tssr108723	transcription start site region 108723			588 bp upstream
Tssr108724	transcription start site region 108724			542 bp upstream
Tssr108725	transcription start site region 108725			520 bp upstream
Tssr108726	transcription start site region 108726			418 bp upstream
Tssr108727	transcription start site region 108727			397 bp upstream
Tssr108728	transcription start site region 108728			353 bp upstream
Tssr108729	transcription start site region 108729			268 bp upstream
Tssr108730	transcription start site region 108730			236 bp upstream
Tssr108731	transcription start site region 108731			194 bp upstream
Tssr108732	transcription start site region 108732			133 bp upstream
Tssr108733	transcription start site region 108733			1069 bp downstream
Tssr108734	transcription start site region 108734			1360 bp downstream
Tssr108735	transcription start site region 108735			1427 bp downstream
Tssr108736	transcription start site region 108736			1465 bp downstream