rs230795468 SNP Detail

Summary

• ID
  rs230795468
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171181254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTCTCC ACAATCTCAG
  GTTGAAAGCC AGACTGGTAA TCTGTATTCA GAGACCTTGT CTCAAAACAA GCAAGAAACC
  ATGCACACAA ACAACCACAT CTCCCAACAT ATATATCAAT AGGGAACAAA TTCTATGTCA
  CACTTAAAAA GAAATCTGGG GCTAGAGAAA TGGCTCAGTG GTTAAGAGCT AGAGAATCCT
  V
  GGGCAGTGGT GGCGCACGCC TTTAATCCCA GCACTTGGGA GGCAGAGGCA GGCAGATTTA
  TTGAGTTCAA GGCCAGCCTG GTCTACAAAG TGAGTTCCAG GACAGCCAGG GCTACACAGG
  GAAACCCTGT CTTGAAGAAC AAACAAAAAA AAGATCTAGA GGATCTGGGT TTAATTTCCA
  GCTCATTACT GGTATGGTAG                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352385340	MGP_WTSI_1_173283817	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	G	G	C	C	G	C	C	C	G	G	G	G	G	G	G	C	C	C	G	C	C	C	G	G	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230795468					SNP	C	C	C	C	G	G	C	C	G	C	C	C	G	G	G	G	G	G	G	C	C	C	G	C	C	C	G	G	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352385340	MGP_WTSI_1_173283817	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171181254 () rs orientation: forward

Symbol	Name	Function Class
Gm37154	predicted gene, 37154	440 bp upstream
Pfdn2	prefoldin 2	within coordinates