rs230799553 SNP Detail

Summary

• ID
  rs230799553
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12327539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGTCTCT CTGTGTCTAT
  TCCTGTATAT GTGTGTGTGT GTGTGTGTGT GTGTGCGTGT TTCTGTCACA CAGCTCTATA
  GTTTGTGTTA ACAAGTGAAT ATTCTGTATA ATGTACCGCA CCAGCTCTGA GACTCTGACC
  TCCCTTCCCA GAATTCCTTC CTGATGCTAT TCACTCATTG GCCCTTCCAC ATTAACCCTG
  W
  AACATCAGTT TTTGTTGCTG ATGGCTAAGC ATCTGCTCAG ATAGACCAGT CCTTGGTGAA
  TGGCTAGACA AACCATCCCT CTGTCCTTGG AGTCAGCCTG TCCACTGGTT TTACTAAGAA
  CCAGGGACCA GTGTTTTCCT TAGCCCTGTA GTCTCAGTCT GTGCCCACAC TCAGGAGGCT
  AGCATGCCAA ACTGACTGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322497649	CHEV_8_12277539	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230799553					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12327539 () rs orientation: forward

Symbol	Name	Function Class
A230072I06Rik	RIKEN cDNA A230072I06 gene	1286 bp upstream
Rr659697	regulatory region 659697	1020 bp proximal