rs230810593 SNP Detail

Summary

• ID
  rs230810593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117112480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACTGGTTC TGATGGTGAG ATAGGAGATG
  GAAATACAGA TACCATACAG AATCCCACAA ACATtatata tatatattgc atattgcata
  tatgggatat atatatatat gtatatatat atatcacata tgggatatat atatatatat
  R
  tgtatatata tatatatata tatatatata tatatatata tatatatata catTCCCATG
  ACAAAGTTTA CTGCAGCAGA GTAAGAGCTT AACAGCTGGT AATGaattat taaattcaat
  aaattaaaat aaCTAAAATC TAAATACTGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323495153	CHEV_10_116713631	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230810593					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117112480 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	966 bp downstream
Rr439488	regulatory region 439488	677 bp distal
Tssr95904	transcription start site region 95904	754 bp upstream
Tssr95905	transcription start site region 95905	810 bp upstream
Tssr95906	transcription start site region 95906	872 bp upstream
Tssr95907	transcription start site region 95907	889 bp upstream
Tssr95908	transcription start site region 95908	1065 bp upstream
Tssr95909	transcription start site region 95909	1141 bp upstream
Tssr95910	transcription start site region 95910	1276 bp upstream
Tssr95911	transcription start site region 95911	1406 bp upstream
Tssr95912	transcription start site region 95912	1501 bp upstream
Tssr95913	transcription start site region 95913	1561 bp upstream
Tssr99410	transcription start site region 99410	855 bp downstream
Tssr99411	transcription start site region 99411	907 bp downstream
Tssr99412	transcription start site region 99412	1028 bp downstream
Tssr99413	transcription start site region 99413	1089 bp downstream
Tssr99414	transcription start site region 99414	1178 bp downstream
Tssr99415	transcription start site region 99415	1261 bp downstream
Tssr99416	transcription start site region 99416	1311 bp downstream
Tssr99417	transcription start site region 99417	1423 bp downstream
Tssr99418	transcription start site region 99418	1437 bp downstream
Tssr99419	transcription start site region 99419	1452 bp downstream
Tssr99420	transcription start site region 99420	1524 bp downstream
Tssr99421	transcription start site region 99421	1598 bp downstream