rs230812322 SNP Detail

Summary

• ID
  rs230812322
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115220029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTCATCA CTTTTTAATG
  CAAGGCATAG TAACTCGGGT TTCTTTTTCT TTTCTTCCTT TCTTTCTTTT TTTTTTTTCA
  AATTTGGTAA ACTTTCCTCG GAAAAGGAGC AAATGTTTCC AGATGTGCGG ACCCACACAC
  AAAGGACAAG AGCGAGGCTC CCCTTGCTCT TCGCAGCTGG GCAAGTGACC AAAGTCAGAG
  S
  ACCTTGTTCT TCTGACACGA CCGAGACTCA AGACTGCCTA GGCTCCCGTT TCCGTCACCC
  CGCTCCCCTC CCAGGTTTAC CTGTGGAAGC TGATGTTAAT GTGCTTGTTG TAGGTAGCAG
  CACAGCCCGC CGCGGCGCAA TTGGTCGGCA TTTCCCCGGG CCCCTCATTC GGCGCCACCT
  TACGCCACTT CGGAGGCGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484717	CHEV_10_114821180	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230812322					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115220029 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	within coordinates
Rr402239	regulatory region 402239	604 bp upstream
Rr439213	regulatory region 439213	within coordinates
Rr439214	regulatory region 439214	169 bp proximal
Rr439215	regulatory region 439215	276 bp proximal
Rr439216	regulatory region 439216	835 bp proximal
Rr439217	regulatory region 439217	1098 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	within coordinates
Tssr95813	transcription start site region 95813	174 bp downstream
Tssr95814	transcription start site region 95814	797 bp upstream
Tssr95815	transcription start site region 95815	827 bp upstream
Tssr95816	transcription start site region 95816	921 bp upstream
Tssr99330	transcription start site region 99330	202 bp downstream
Tssr99331	transcription start site region 99331	213 bp downstream
Tssr99332	transcription start site region 99332	264 bp downstream
Tssr99333	transcription start site region 99333	352 bp downstream
Tssr99334	transcription start site region 99334	392 bp downstream
Tssr99335	transcription start site region 99335	627 bp downstream
Zfc3h1	zinc finger, C3H1-type containing	835 bp upstream