rs230814124 SNP Detail

Summary

• ID
  rs230814124
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101121728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCACAGCC ATGAATTAAG
  ACTATTAGGG CCCAGTCCTA GTTCCCGAGA AATCACAGAG GATACACCTC CGAAGGGGGC
  ACACAGGCAC CAGGAGATAA CCACACCTCT GGTCTAGTCT CCCTAAAGAA CTCCCTTCAT
  AAACACTCAT CATCCTAGGA GCCTGGGAGT GTCTCCAGAG GGGTGCCTAC TGCTTCTGAG
  K
  CGACGGGGGC GTTCGTTCGC GCGGAACCGG AGCCAGGAGT TGGGGAGCCA CAGACACTGG
  TCCCAGTTTC GATGAATCGG GTCCCTTCGG GTAGGACCTA TAGTCGTCTC TCCCCATTCC
  CTTCACCCAT GGCCCTCCAT CATGCTACAT TCCGGCAAGC TGCGGTTCGG AGTTCCCGGG
  GCGCGCCCCC ACGCAGACCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229179	CHEV_4_100937136	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230814124					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101121728 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14497	CpG island 14497	within coordinates
Jak1	Janus kinase 1	within coordinates
Rr99637	regulatory region 99637	within coordinates
Tssr42547	transcription start site region 42547	325 bp downstream
Tssr42548	transcription start site region 42548	683 bp downstream
Tssr42549	transcription start site region 42549	705 bp downstream