rs230814695 SNP Detail

Summary

• ID
  rs230814695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70701455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGAAGT CAAGTTCAGC
  TCCTAAAATG GATGTGGGAG CAAACTTTGA AGATAAACTG AATGACCCAG AGGATGAAAC
  AGCGCAGATC AAAGAGGGGC CTGGAGCTCT GAGAAGAGAA GGAGACTCAT CCGTGTTGAG
  TTTCCACAAG TACTGTCTTG AGTTTTGCAA TAAAAGTGGG ATAGCAGAGT TGAGTGAGCC
  R
  TAGGCTGAGT TCTCTCTTTT GTCTCCTAAG TTTTTATGAC TACAAAAATC AGTAGTATGT
  CCTGAAATAA TCATTAAGCT GTTTGAAAGT ATGACTGCTT GCCATGTAGA TACCATGGCT
  TGCTGAATAA TCAGAAGAGG TGTGACTCTT ATTCTAAAAT TTGTCACAAA ATGTCAAAAT
  GAGAGACTCT GTAGGAACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815781	CHEV_6_70674465	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230814695					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70701455 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1975 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1964 bp upstream
Igkj1	immunoglobulin kappa joining 1	1872 bp downstream
Igkj2	immunoglobulin kappa joining 2	1517 bp downstream
Igkj3	immunoglobulin kappa joining 3	1211 bp downstream
Igkj4	immunoglobulin kappa joining 4	886 bp downstream
Igkj5	immunoglobulin kappa joining 5	548 bp downstream
Rr158	regulatory region 158	1480 bp proximal
Rr163	regulatory region 163	1949 bp distal
Rr165	regulatory region 165	1949 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	664 bp upstream
Rr399685	regulatory region 399685	1076 bp upstream
Tssr56950	transcription start site region 56950	1926 bp downstream
Tssr56951	transcription start site region 56951	1900 bp downstream
Tssr56952	transcription start site region 56952	1620 bp downstream
Tssr56953	transcription start site region 56953	924 bp downstream
Tssr56954	transcription start site region 56954	792 bp downstream
Tssr56955	transcription start site region 56955	571 bp downstream
Tssr56956	transcription start site region 56956	1337 bp upstream
Tssr56957	transcription start site region 56957	1959 bp upstream