rs230815300 SNP Detail

Summary

• ID
  rs230815300
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:88824065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTTGCAGC CGCAGCCCCG GAGCAACGCG
  CCTAGCACCC AGCGCGTCCC GGCCATCGGC TCCGGAGGCG GCGCGGGGCC TGGAGGTGGC
  CGCTGTGGCG CGAGCGGAGG GGAAGTGGAA TCCAGGGCGG GGGAGGGGGC ACCGGGCACA
  W
  GCGCCGCGCG CACCCGGGGC TGAGACGAGG CTCGGAGGCG GAGGTGAGCG AGCGGCCCCG
  CCCAGGCTCC GCCCTCGGGG CGGGGCTTTC CCGCCGGTAA GGGTGTGGGT GGGGTGACCT
  GAGCGCCTCC AGAGTGGAAG TTGTCCCAGG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321602039	CHEV_5_89105231	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230815300					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88824065 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16030	CpG island 16030	within coordinates
Gm71600	predicted gene, 71600	17 bp upstream
Grsf1	G-rich RNA sequence binding factor 1	35 bp upstream
Rr378262	regulatory region 378262	1732 bp upstream
Rr614150	regulatory region 614150	551 bp distal
Rr614151	regulatory region 614151	50 bp distal
Rr614152	regulatory region 614152	228 bp distal
Rr614153	regulatory region 614153	167 bp distal
Rr614154	regulatory region 614154	within coordinates
Rr614155	regulatory region 614155	28 bp proximal
Tssr51689	transcription start site region 51689	979 bp upstream
Tssr51690	transcription start site region 51690	643 bp upstream
Tssr51691	transcription start site region 51691	614 bp upstream
Tssr51692	transcription start site region 51692	551 bp upstream
Tssr51693	transcription start site region 51693	77 bp upstream
Tssr51694	transcription start site region 51694	20 bp upstream
Tssr51695	transcription start site region 51695	within coordinates
Tssr51696	transcription start site region 51696	20 bp downstream