rs230816950 SNP Detail

Summary

• ID
  rs230816950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13839120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGGGAGA CAGGAGCCCA
  ATGTCCCACT GGGCATCTGG CTTTGGAATG GCTAGTACTG GTTTACACTT TGTGCACAGT
  GGCTTGCAAG AGACAAATCT TGGGCCTATT AGAGAGAAAG CAGTGATTGA TGTATAGAAA
  GGTAGTGAAC GTTGTCCCAG TTGACATTCC ATAGTTATTG GTGGTTTGCC TGCCTTAAAG
  S
  AGAACTATGG TTCAGTTCTT GGGCCAGGAA TTCCGGAGGC TAACTTCTGC CCTTCCCACA
  GGGTCACCTG TTAGCTGGTA TTAGCATTGA TACATGTTTT CAACAGTTGT CCCTTCAACA
  ATTCAGTCCA CAGTTTCTTC CTTGAAGCTT GAAAAATTTC AGACAAAGCA ATCATTGAAA
  AAATGTCGAA GATTGATTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379498331	MGP_WTSI_10_13683182	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230816950					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379498331	MGP_WTSI_10_13683182	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13839120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1318	CpG island 1318	1167 bp proximal
Gm56954	predicted gene, 56954	692 bp downstream
Gm66890	predicted gene, 66890	1244 bp upstream
Rr384171	regulatory region 384171	688 bp upstream
Rr427854	regulatory region 427854	754 bp proximal
Rr427855	regulatory region 427855	1255 bp proximal
Tssr92402	transcription start site region 92402	1250 bp upstream
Tssr92403	transcription start site region 92403	1420 bp upstream
Tssr92404	transcription start site region 92404	1451 bp upstream
Tssr92405	transcription start site region 92405	1473 bp upstream
Tssr92406	transcription start site region 92406	1638 bp upstream
Tssr92407	transcription start site region 92407	1863 bp upstream
Tssr92408	transcription start site region 92408	1882 bp upstream
Tssr92409	transcription start site region 92409	1914 bp upstream
Tssr92410	transcription start site region 92410	1952 bp upstream