rs230824308 SNP Detail

Summary

• ID
  rs230824308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:3381864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGGTGGA TCCCGGAGGA CCTGGGGTCC
  GAGGGTCCGA GAGTAAGAAA ACAAACTCGG TGTTTGAGAG TTAAGAGACC GTCGCCACTG
  GGTAGGCTCT AGGCGGGGTC TTTGAGGAAG CGGATCACGA CGAAGGAGGA GGGCCCAGGC
  Y
  GGTAAGAGCA AGCCGTGAGT CTGGGAAAGG GTCCTAAATA AAGCGGAGAG TTACGGACTC
  CAAGGATATC GAAGGGAGAT GGAGTTTGGA CTTGGGCTTT GAGGAATGGC ACTTGAGCCA
  TTCAGATATC CAGATCGCGG AAACGCTGGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322091624	CHEV_7_3333448	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230824308					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:3381864 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacng7	calcium channel, voltage-dependent, gamma subunit 7			Intron
				mRNA-UTR
				Splice-Site
Cpgi18206	CpG island 18206			1223 bp distal
Cpgi18207	CpG island 18207			within coordinates
Gm72265	predicted gene, 72265			within coordinates
Rr641798	regulatory region 641798			383 bp distal
Rr641799	regulatory region 641799			within coordinates
Tssr64248	transcription start site region 64248			1272 bp downstream
Tssr64249	transcription start site region 64249			1180 bp downstream
Tssr64250	transcription start site region 64250			1138 bp downstream
Tssr64251	transcription start site region 64251			511 bp downstream
Tssr64252	transcription start site region 64252			398 bp downstream