rs230824496 SNP Detail

Summary

• ID
  rs230824496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8970994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCACAGCT GCACACTATG
  GTACAGTTTC ATTCCTTCTC AAGGTAGCTA CAAGCCTTGT TTGTTTGTTT GTTTGTTTTT
  GAGACAGGGT TTCTCTGCAT AGCCCAGGCT GGCCTTGAAC TCAGAAATCC ACCTGCCTCT
  GCCTCCCAAG TGCTGGGATT AAAGGCGTGC GCCACCACAG CCCGGCTGAT AGCCACAAAT
  Y
  TTAAAACAAA TACAAAATAA ATTCAGTCAA AAACTTGACT CAGTTAATGA GGATCATAAG
  ATGTTAGAAG GAACTATAGA GTGAATATAA AGCACCCATT GTTGAAGTAA AAATGATAAC
  TGAATCACCC AACTTATGTC AAATGGCTTT CTCTGAGAAG AGGTATGAGT CAGTGAGTCT
  CGTGTAACAT GCTGTAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323886808	CHEV_12_8927800	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230824496					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8970994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	404 bp proximal
Gm60663	predicted gene, 60663	within coordinates
Laptm4a	lysosomal-associated protein transmembrane 4A	1078 bp upstream
Rr403227	regulatory region 403227	811 bp upstream
Rr462715	regulatory region 462715	114 bp proximal
Rr462716	regulatory region 462716	615 bp proximal
Rr462717	regulatory region 462717	752 bp proximal
Rr462718	regulatory region 462718	855 bp proximal
Rr462719	regulatory region 462719	1609 bp proximal
Tssr112751	transcription start site region 112751	604 bp upstream
Tssr112752	transcription start site region 112752	693 bp upstream
Tssr112753	transcription start site region 112753	713 bp upstream
Tssr112754	transcription start site region 112754	1023 bp upstream
Tssr112755	transcription start site region 112755	1048 bp upstream
Tssr112756	transcription start site region 112756	1067 bp upstream
Tssr115725	transcription start site region 115725	850 bp downstream