rs230841077 SNP Detail

Summary

• ID
  rs230841077
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96182988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTAGGGC TAGGAATGTG
  GGGTATTCAG ATGAAGAGAG GGGGTACAGG AGCTTTCTTT TTGTCACAAA GCAGATAGCA
  GCTCCTAACA CAGGCTGCTG CTTTGGCCTC ACCTCTCAGA ACATTCCCTT GTGGAGGACT
  GGGGGTGGGG GTGGGGACTT TTACTATAAA AGACAGACAG AGCTCTTGAG AAAAAATGTG
  S
  AGGTTCCAGA GAAAACCCCG GTTCTAGCTG AACCATTATG GCTTCTCCAC CCTGAATTCT
  TGCACCCCAA ATCTCAGCTG TCTCAGATTG GGGTTTCCCT AAAAAGAGAA GGGGAAGAAA
  AGAAGATGGC GACGGAGAAA AGGGTTGCTG GTGGAGCAGC CATGAAGAAA TGCAATAAAT
  TCCTTGTTGT TTTATGAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384366343	MGP_WTSI_11_96153476	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230841077					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384366343	MGP_WTSI_11_96153476	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96182988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3639	CpG island 3639	1140 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	659 bp upstream
Hoxb7	homeobox B7	2000 bp downstream
Rr386515	regulatory region 386515	within coordinates
Rr455356	regulatory region 455356	within coordinates
Rr455357	regulatory region 455357	325 bp proximal
Rr455358	regulatory region 455358	1245 bp proximal
Rr455359	regulatory region 455359	1472 bp proximal
Tssr104478	transcription start site region 104478	3 bp downstream
Tssr104479	transcription start site region 104479	291 bp upstream