rs230847173 SNP Detail

Summary

• ID
  rs230847173
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81005596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCCGGGT CGTCTTTCGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTAGC ATTCTGGTCG
  ATTCTCTGCA AGCCACTCGA TCCTTACTCT TGTTCTAACT AAATTAAAAA GAGAGAGAGA
  GAGCTCTTCC AAGCTTGACT TCTATCGCAA GCCCCCTGTG GCTTCCTAGT ACCCACAAGA
  M
  GTAGAGTAAA AAGTGTTTTC TTTTGAGAAC CGGTCTCATG AAGCTCAGGC TCACCTGGTA
  TTCCCCTCTG TAACTAACCC CACTGTAGCT TCTATTTCTC AAGTGCTGGC GTGACAGGCA
  CGGCTCACCA CACCTTATTC TGTGATGCTG AGGATTAAAG AAGGGTTCTC TGTACGATAG
  GCAAGCACTT CACCAATCGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381031924	MGP_WTSI_10_80632507	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230847173					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381031924	MGP_WTSI_10_80632507	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81005596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1946	CpG island 1946	1719 bp distal
Cpgi1947	CpG island 1947	579 bp distal
Rr402075	regulatory region 402075	1720 bp downstream
Rr402076	regulatory region 402076	659 bp downstream
Rr402077	regulatory region 402077	within coordinates
Rr435533	regulatory region 435533	1850 bp distal
Rr435534	regulatory region 435534	1349 bp distal
Rr435535	regulatory region 435535	1008 bp distal
Rr435536	regulatory region 435536	within coordinates
Tssr94693	transcription start site region 94693	1722 bp downstream
Tssr98566	transcription start site region 98566	1981 bp upstream
Tssr98567	transcription start site region 98567	1913 bp upstream
Tssr98568	transcription start site region 98568	1857 bp upstream
Tssr98569	transcription start site region 98569	878 bp upstream