rs230853623 SNP Detail

Summary

• ID
  rs230853623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96242714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCCCCC CCCCGCGAAA
  TTGCTCCATT GCATAAACCT GGGGGGGGCG GGAGAGGGGG GTCCCTCTGA TTCTCCCTCC
  TGACGCCCCC CCCAGCAGGC CCCCTCCCCC ACCATTGAAA GCCATGAATT TTGAATTTGA
  GAGGGAGATT GGGTTTATAA ACAGCCAGCC ATCGCTCGCC GAGTGTCTGA CTTCCTTCCC
  Y
  GCTGTCTTGG AGACATTTCA AACTTCATCA ATCAAGGAGT CGACATTAAT TCCTCCTCCT
  CCTCCTCTGG AGCAAACCTT CCCCAGCCTC CAGCTCGGCG CCTCCACCCT TCAGAGACCA
  GGGAGCCAAA AGCAAGCCGG AGATGGGCCT GCTCTGCGGT CACCGCCGCC ACTCCCCGTT
  GCCCCCCCAG CCCCCGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384367039	MGP_WTSI_11_96213202	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230853623					SNP	C	C	C	T	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384367039	MGP_WTSI_11_96213202	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96242714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	124 bp proximal
Cpgi3657	CpG island 3657	780 bp proximal
Hoxb2	homeobox B2	Coding-Synonymous
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr141	regulatory region 141	1440 bp distal
Rr454	regulatory region 454	1668 bp distal
Rr455383	regulatory region 455383	1813 bp distal
Rr455384	regulatory region 455384	1420 bp distal
Rr455385	regulatory region 455385	247 bp distal
Tssr104519	transcription start site region 104519	253 bp downstream
Tssr104520	transcription start site region 104520	14 bp downstream
Tssr104521	transcription start site region 104521	10 bp upstream
Tssr104522	transcription start site region 104522	62 bp upstream
Tssr104523	transcription start site region 104523	86 bp upstream
Tssr104524	transcription start site region 104524	166 bp upstream
Tssr104525	transcription start site region 104525	232 bp upstream
Tssr104526	transcription start site region 104526	976 bp upstream
Tssr104527	transcription start site region 104527	998 bp upstream
Tssr104528	transcription start site region 104528	1187 bp upstream
Tssr104529	transcription start site region 104529	1239 bp upstream
Tssr104530	transcription start site region 104530	1267 bp upstream
Tssr104531	transcription start site region 104531	1436 bp upstream
Tssr110331	transcription start site region 110331	1761 bp upstream
Tssr110332	transcription start site region 110332	1689 bp upstream