rs230857542 SNP Detail

Summary

• ID
  rs230857542
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93612441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGCAATG GGGTGCAGTA
  AAGAAACTGC CAACATGACT GCTCCATTAG GGGAAAGGTG TGTTTTGTTT TGTGGGTTTT
  TTTTTGGGGG GGGGGGGGAC AATCCAGAGG CATTTGGAAG TGTCTAGAGG AGAGAAAGGT
  GTGAGGGGCG GGGAGTGGGG AGGGGGCTGT AAGACCTCAG GGAGGACCAA GCATAGGGCT
  K
  TAAAGACAAG GGAGTGCACA GCTTGGGGAG GGCCTCTTGG GGGCGGGGGG GGGGGGGGAT
  GGAAAGCCCA TTTCACAAGT TCCAGAGAAA TGCTGGCTGG CTTTTTTCTA ACCACCACAA
  ACCCTATAGT CTAGTTTGAG CTGATTTCTA AACAAATGGA GGACCTGTGA CCTAACAGGT
  ATCTAAAAGA GCTTTACCGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325280256	CHEV_16_93815798	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230857542					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93612441 () rs orientation: forward

Symbol	Name	Function Class
Gm30881	predicted gene, 30881	within coordinates
Rr325602	regulatory region 325602	359 bp proximal
Rr370142	regulatory region 370142	838 bp upstream
Tssr142206	transcription start site region 142206	835 bp downstream