rs230866555 SNP Detail

Summary

• ID
  rs230866555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85321965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACACGGAT TAAGGAACTC
  CACTGAGGAG ATTAAGGCAG TACAGTCATG GTTTTGAAGA CAGCTTGAAG CCTTGTAACA
  ACAACAACAA TGAAACACAC ACACACAGAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACAC ACAGACAAAA ACCATAAATA GTTGAGAGAG CCTAGGATGG TCTATTAGTT
  Y
  CCTGCCCCAC TCTGTCCTCA TGGGAGAGTT TTAGTGGGTT TTGTTTCTGC CATTCAGAAA
  GGTATTCAAA TGAGTTCCTC ACAACCTCCC TTGGTATGTT GCTGGGGTTT CCTATGACTA
  CTGTTAACAC AGGAACCAGG AAGAATCAGA ATAACATGTG GAGAGGAACA CATGCATTCC
  TGGTCCCAAC TTCAAGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CBA/J	CZECHII/EiJ	LEWES/EiJ	LG/J	NOD/ShiLtJ	PL/J	PWK/PhJ	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss175378665	SC_MOUSE_GENOMES_NOD-Mrktac_7002	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	T	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CBA/J	CZECHII/EiJ	LEWES/EiJ	LG/J	NOD/ShiLtJ	PL/J	PWK/PhJ	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs230866555					SNP	T	C	T	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss175378665	SC_MOUSE_GENOMES_NOD-Mrktac_7002	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85321965 () rs orientation: forward

Symbol	Name	Function Class
Gm16025	predicted gene 16025	1629 bp downstream
Rr414358	regulatory region 414358	1824 bp distal