rs230867743 SNP Detail

Summary

• ID
  rs230867743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83721113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACTACAG TAATAATAAT
  CTCTTTCTCT AGCCCTCCTG AAAATAATAC TTGAAACAAA CCATAGAGTA TAGTTTATGT
  ATAAAAATTA GGTTAATAAA TATTTATACT AAAAAGCAGA AATTAAGCAA AAGTTATGCA
  CCGGTGGTGA CCTTCCTAAT TCTTTGCATT TTTCCTGATG GCCTTGAAAT GTGAGGACAC
  Y
  ATTGATCTGT TGCTATTCTA TTTGTGTGGA CTTTATACAA GTCTACATTT TATGAATTTC
  AGGAGGCAAC ACTTCAGTTA CTGAATTGAG CATTGTCCTT GTGCGGAAAA CAAAATAAAA
  GTCGAATTAG GTTTAAATTT CCATCTCTCT CCACTACCTG GCCATATTTC AAAGCGGAGA
  CTATTTTCAA TGATATTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389277633	MGP_WTSI_13_83712152	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230867743					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389277633	MGP_WTSI_13_83712152	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83721113 () rs orientation: forward

Symbol	Name	Function Class
Gm55122	predicted gene, 55122	within coordinates
Mef2c	myocyte enhancer factor 2C	within coordinates
Rr399	regulatory region 399	745 bp distal
Rr1598	regulatory region 1598	within coordinates
Rr483252	regulatory region 483252	878 bp distal
Rr483253	regulatory region 483253	123 bp proximal
Rr483254	regulatory region 483254	639 bp proximal
Rr483255	regulatory region 483255	1814 bp proximal
Tssr4132	transcription start site region 4132	916 bp upstream
Tssr120502	transcription start site region 120502	637 bp downstream
Tssr120503	transcription start site region 120503	604 bp downstream
Tssr120504	transcription start site region 120504	581 bp downstream
Tssr120505	transcription start site region 120505	583 bp upstream
Tssr120506	transcription start site region 120506	1481 bp upstream
Tssr123327	transcription start site region 123327	984 bp upstream
Tssr123328	transcription start site region 123328	876 bp upstream
Tssr123329	transcription start site region 123329	840 bp upstream