rs230870829 SNP Detail

Summary

• ID
  rs230870829
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23735587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATTAA AATTTATTGT
  GGAACAAGGA GCAGATATGA AAGCTGCAGG AGAGAACCTC CATTCATAGA GTGTCTGGCT
  CTGGATAACA GCAGGTACTA CTAGCTTCAA TCAATTTTAA ATGTCGTTCT TTAAATGTTA
  ATTCTTTCAT TCATCCATTC ACTTTACATA CTTATAACCA TTTACACATC CTCCTCTCCT
  A
  CTCCTTTCCT ATTTTCCCCT CTTTCCCATC CACTATTCCT TCCTTCTTCA GAAAAAAAGG
  AGCCCTACAC CCCCTTCCCC CAGATATCTA CATGCTTTGG CATACCATGT TGCTCAATAA
  CTAGGCACAG ATTGGTGTTC TCTTTCAGAG GTCATGAAAG GCAGCCCAGA AGGGATAAAG
  TATCCCAGAG AAAGCAATAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss397836700	MGP_WTSI_17_23653580	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs230870829					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397836700	MGP_WTSI_17_23653580	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23735587 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	829 bp downstream
Rr329666	regulatory region 329666	787 bp distal