rs230875220 SNP Detail

Summary

• ID
  rs230875220
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93354687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAGAACT GGAGGAAGAG
  CGGCTGCGGG ACAGAAAGAT CCGCCGGGAG CAAGAGCTCC GCCGGGAACG CGAGCAAGAG
  CAGCGGCGCC GCCTGGAGCG TGAGGAAGAG CAGCAGCGTC TCCATGAGCG TGAGGAAGAG
  CAGCGGCGCC GCCAGGAGCG CGAGCAAGAG CAGCAGCGGT GCCTGGAGCG TGAGGAGGAA
  M
  AATTTCGCTT TGAGGAGCAG CAGCGCCGCC GCCAGGAACG CGAGCAACAG TTGAGACAGG
  AGCGCGACAG AAGAGTCCTT GAGGAAGAAG AGCTTCGTCA GGAAAGGGAG GAGCTGCTGC
  ACCGCCAGGT GGGTGGCAGG AAATTCCGGG AAGAGGAGCG ACTCCGCCTG GAAAGAGAGG
  AACAGCAGCG TCGTCTCCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358876349	MGP_WTSI_3_93251302	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230875220					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358876349	MGP_WTSI_3_93251302	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93354687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	within coordinates
Gm37245	predicted gene, 37245	within coordinates
Gm66249	predicted gene, 66249	within coordinates
Tchh	trichohyalin	within coordinates
Tssr30394	transcription start site region 30394	1995 bp downstream
Tssr30395	transcription start site region 30395	1968 bp downstream
Tssr30396	transcription start site region 30396	1918 bp downstream
Tssr30397	transcription start site region 30397	1902 bp downstream
Tssr30398	transcription start site region 30398	1824 bp downstream
Tssr30399	transcription start site region 30399	1745 bp downstream
Tssr30400	transcription start site region 30400	1296 bp downstream
Tssr30401	transcription start site region 30401	1275 bp downstream
Tssr30402	transcription start site region 30402	1175 bp downstream
Tssr30403	transcription start site region 30403	1138 bp downstream
Tssr30404	transcription start site region 30404	within coordinates
Tssr30405	transcription start site region 30405	104 bp upstream
Tssr30406	transcription start site region 30406	252 bp upstream
Tssr30407	transcription start site region 30407	447 bp upstream
Tssr34369	transcription start site region 34369	1992 bp upstream
Tssr34370	transcription start site region 34370	1966 bp upstream
Tssr34371	transcription start site region 34371	1823 bp upstream
Tssr34372	transcription start site region 34372	1162 bp upstream
Tssr34373	transcription start site region 34373	within coordinates