rs230879855 SNP Detail

Summary

• ID
  rs230879855
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76375451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAG CCCCCGCCCC GCCCAGCCTG
  R
  CTGCGGCCCG CTTCTGTCCC GGCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325699774	CHEV_18_76402034	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230879855					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76375451 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	within coordinates
Rr540992	regulatory region 540992	669 bp distal
Rr540993	regulatory region 540993	within coordinates
Smad2	SMAD family member 2	within coordinates
Tssr151989	transcription start site region 151989	1066 bp downstream
Tssr151990	transcription start site region 151990	1018 bp downstream
Tssr151991	transcription start site region 151991	916 bp downstream
Tssr151992	transcription start site region 151992	639 bp downstream
Tssr151993	transcription start site region 151993	421 bp downstream
Tssr151994	transcription start site region 151994	220 bp downstream