rs230887815 SNP Detail

Summary

• ID
  rs230887815
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAGCAGA GATGCAGGCG
  GAGCCGCGCG GGCCCCCAAA ACAGGATGTC GTGTCGTGGT TCCGCACCTC GCAGCTCCGC
  GGGGCCCTGG GGAGGGGGCG GGGCGTGGGA AGACGTGGGG CTCTTCTTGT TCCCTGATCT
  CGCCCTGGCG CGCGGCTGTT TGGAGCGGTA GGACCGCGCC CAGGCCTGAG GTCCGGCTTG
  K
  GCCCTGGAGA CCGGCGAGTG GACGGCCTCG AGGGCGCCCT CTGGTGCTTC TAACCCAGGC
  CTTGGGCGCA GTTTTCCTGG AGAATCCACA GTCTTGATTC TTTTAACAAC TTTCTGGGTG
  CTCTACCACG TGCAGAGCTC CGCAAGGTAC AGTGAAAACA ACACAAGATA AACACCCCGT
  CTTACAGAGG ACCTCCAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353662	CHEV_7_109399404	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230887815					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	within coordinates
Rhog	ras homolog family member G	772 bp upstream
Rr652562	regulatory region 652562	813 bp distal
Rr652563	regulatory region 652563	277 bp distal
Rr652564	regulatory region 652564	31 bp proximal
Tssr2354	transcription start site region 2354	614 bp downstream
Tssr68328	transcription start site region 68328	1197 bp downstream
Tssr68329	transcription start site region 68329	1176 bp downstream
Tssr68330	transcription start site region 68330	635 bp downstream
Tssr73939	transcription start site region 73939	1516 bp upstream
Tssr73940	transcription start site region 73940	1469 bp upstream
Tssr73941	transcription start site region 73941	1416 bp upstream
Tssr73942	transcription start site region 73942	1331 bp upstream
Tssr73943	transcription start site region 73943	804 bp upstream
Tssr73944	transcription start site region 73944	767 bp upstream
Tssr73945	transcription start site region 73945	752 bp upstream
Tssr73946	transcription start site region 73946	556 bp upstream
Tssr73947	transcription start site region 73947	411 bp upstream
Tssr73948	transcription start site region 73948	375 bp upstream
Tssr73949	transcription start site region 73949	342 bp upstream
Tssr73950	transcription start site region 73950	295 bp upstream