rs230893890 SNP Detail

Summary

• ID
  rs230893890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87677921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACAGTGT TTCAGAGAAG
  GAAATACGAA GTTGGACTGC GGTACCATAA AATGTCCAGC AGAGGGCAGT AAAAACCAAC
  GCAAGGTCAG GCGGCATAAG ACCCATCATT TTTGAAGCCT TGGAAATTAC CTGATCTTTC
  TCATTTAAAT GACCAATGAG GGCAACTGAG GTGCAGAAAG AAAGTGAGAC ATATGTGTGG
  Y
  TCCACTTGTG CTCAGATGTT CTGCTCCATG TTCTTTTTTT TTTCTGGGAT TGCATTCTGC
  CCTACGGCCC ACATCCCATT CCTGCTAAGA AAGTTTAACA CTTGAGTCCC AGAAATAGTT
  TCTTCTACTG TTTTGCTAAA CAGTCACATC AGATTGCCTT CTAAATAGCC ACATTATTAC
  AATATTAGCG ATTCCTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358783637	MGP_WTSI_3_87574536	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230893890					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358783637	MGP_WTSI_3_87574536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87677921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13336	CpG island 13336	1419 bp distal
Pear1	platelet endothelial aggregation receptor 1	1659 bp upstream
Rr579542	regulatory region 579542	1682 bp distal
Rr579543	regulatory region 579543	1171 bp distal
Rr579544	regulatory region 579544	1451 bp distal
Rr579545	regulatory region 579545	within coordinates
Rr579546	regulatory region 579546	128 bp distal
Rr579547	regulatory region 579547	506 bp proximal
Tssr33952	transcription start site region 33952	1654 bp upstream
Tssr33953	transcription start site region 33953	1639 bp upstream
Tssr33954	transcription start site region 33954	1546 bp upstream