rs230906826 SNP Detail

Summary

• ID
  rs230906826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69491406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGGAAGG GAGCCATCAG
  TTAAAAAACA AAGTGGATAT TCAGAGCAGG TCAAGCCCGC CTGAGTAGGA GCCGTTTGGA
  TGACAGGAGG GACCAGGAAG AAGTTAAAAG TCTAAGCCTA CTAGAGAATT TTCTAGAAGA
  ATTAAAGACT TCTCTTCCAG TCATCCTTTG GAGTCACAGT TGGGGGAGAA GCAGGATGTA
  Y
  CAGGAAGGAC GGAAAAGGCC ACAGAACCAA CTTGTACTGA GCTACAAATG GCAGCTTTTC
  AGAGGGAGAG GGATCAGGGA GAGGAGAGGG CAGAACTGCT GGAGGAACCA GAAGTCAAAG
  CCACCAAGAT ACTGGCTATG GTGACAGAAG TGTGAAGAGA TGAAAGGAAA GTGGCTAGAA
  CCTTGTAAAA GGAAGAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787295	MGP_WTSI_11_69414082	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230906826					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787295	MGP_WTSI_11_69414082	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69491406 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	841 bp distal
Rr450034	regulatory region 450034	970 bp distal
Rr450035	regulatory region 450035	within coordinates
Tssr3544	transcription start site region 3544	115 bp downstream
Tssr102487	transcription start site region 102487	540 bp downstream
Tssr102488	transcription start site region 102488	583 bp upstream
Tssr102489	transcription start site region 102489	658 bp upstream
Tssr108712	transcription start site region 108712	562 bp upstream
Tssr108713	transcription start site region 108713	411 bp upstream
Tssr108714	transcription start site region 108714	343 bp upstream
Tssr108715	transcription start site region 108715	309 bp upstream
Tssr108716	transcription start site region 108716	5 bp upstream
Tssr108717	transcription start site region 108717	4 bp downstream
Tssr108718	transcription start site region 108718	63 bp downstream
Tssr108719	transcription start site region 108719	74 bp downstream
Tssr108720	transcription start site region 108720	78 bp downstream
Tssr108721	transcription start site region 108721	92 bp downstream
Tssr108722	transcription start site region 108722	173 bp downstream
Tssr108723	transcription start site region 108723	201 bp downstream
Tssr108724	transcription start site region 108724	254 bp downstream
Tssr108725	transcription start site region 108725	278 bp downstream
Tssr108726	transcription start site region 108726	373 bp downstream
Tssr108727	transcription start site region 108727	395 bp downstream
Tssr108728	transcription start site region 108728	439 bp downstream
Tssr108729	transcription start site region 108729	526 bp downstream
Tssr108730	transcription start site region 108730	558 bp downstream
Tssr108731	transcription start site region 108731	589 bp downstream
Tssr108732	transcription start site region 108732	650 bp downstream
Tssr108733	transcription start site region 108733	1872 bp downstream