rs230915387 SNP Detail

Summary

• ID
  rs230915387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112416374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCCTCTA TTCTACCTCC
  ATGAGAACCT AGGGAGGGTC AGGTGCCTTA CCTCCAAGTA TTGTCCCCTG TAGATAAGAT
  GAGTGTCACT TTCTGCCTTC CTGTGGTGCT TCTGGGTGGT AGCCTTCCCC CCATCCCCGT
  CAGAACCTGT GTCCTTCTGA GTCTTATCTG AGAGCCTGGC CCATGCTGGG CACAGAGGGG
  R
  GGCTTGGATT GAAGCCACTC TCTACTTAGA AGGGTTTCTT CTACCCAGTC CTAGAGATAT
  CAGTGTGCTC TGTACAGCAT GGGCATGGTC CGGCCTGGGG TCCCCTTCTC TATCAGGGTG
  GACAGAATTG GGTGGGATCC AGCTATTCCT GTTGAGAAAC CAGCTAATGA CAGACAGGGG
  GTCAGAGGAC TTGTGTTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366277534	MGP_WTSI_5_112697528	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230915387					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366277534	MGP_WTSI_5_112697528	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112416374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16256	CpG island 16256	764 bp proximal
Crybb1	crystallin, beta B1	within coordinates
Rr617312	regulatory region 617312	1807 bp distal
Tssr47978	transcription start site region 47978	983 bp downstream
Tssr47979	transcription start site region 47979	951 bp downstream
Tssr47980	transcription start site region 47980	802 bp upstream
Tssr47981	transcription start site region 47981	949 bp upstream
Tssr47982	transcription start site region 47982	966 bp upstream
Tssr47983	transcription start site region 47983	980 bp upstream
Tssr47984	transcription start site region 47984	989 bp upstream
Tssr47985	transcription start site region 47985	1000 bp upstream
Tssr52559	transcription start site region 52559	1146 bp upstream
Tssr52560	transcription start site region 52560	1107 bp upstream
Tssr52561	transcription start site region 52561	977 bp downstream
Tssr52562	transcription start site region 52562	1021 bp downstream