rs230916267 SNP Detail

Summary

• ID
  rs230916267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60959739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCAGTT CCTCTCTGTA
  ACCAGTCCTC AAAATGAGTG CCATTTTTTT CTCTACTCTC TTTGAATTTC CCCCTTCTCT
  ATTCTCTAAA CACAGTAGTT CGGTATGGAC CCAGACTTTG ACTATTTTAG GTGCTATGAA
  CTAATTCTGT TACAGCTACT CACCTCTGGT GCTGTGGCAG TGTACTGTGT GCTAAGGTTC
  Y
  GACACAGCTT AACTATATGA ATGCTGAAAT CTTTCATATA ATGCTGTATC ACAAAATATT
  CTTTCTAGCC AACTCTCTGA AAATGTAAAG ATCAAGTTCA TGCAAACAAT CCCAGCACTT
  AAGAGTCCAG AACAGTACCA CAGTTCAGGG GCGAGCCTAG ACAACATAAT GAGACTTGGT
  CTCATTTAAA AAAAAAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323327711	CHEV_10_60586708	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230916267					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60959739 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	1177 bp downstream
Rr228136	regulatory region 228136	1539 bp distal
Rr401931	regulatory region 401931	1825 bp downstream
Sgpl1	sphingosine phosphate lyase 1	within coordinates