rs230916315 SNP Detail

Summary

• ID
  rs230916315
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89788814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGCGTT CTGGTGGTAG
  TTCTGGAACA ATTGCGAGGG AGACATGGTG GTCATGGTGG TGGTGGGGTG AGGCTGAGTG
  GAGACACTGG AGCTGCAGAG TGAGGAAGTT GCAAAGGGCT CAGGCTCGAA GTGGCCAGTG
  GGGGTTGGAG GGGGTCAGTC AAGCACCTGT TCAGTTCAAG CATTGTTGAA GCAGGAAACC
  W
  TGGCGACTCT GGTTGAGAAC GTCTGGTCTC CTTGTAGATT AAAAGGTTGG CTTCAGCCGG
  GTGTGGTGGC ACACGTCTTT AATCCCAGCA CTCTGGAGGC AGAGGCAGGC AGATTTCTGA
  GTTTGAGGCC AGCTTGGTTT ATAAAGTGAG TTCCAGGACA GCCAGGGCTA TACAGAGAAA
  CCCTGTCTCA AAAAAACCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404036139	MGP_WTSI_X_87990547	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230916315					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404036139	MGP_WTSI_X_87990547	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89788814 () rs orientation: forward

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	146 bp upstream
Tssr161463	transcription start site region 161463	497 bp downstream
Tssr161464	transcription start site region 161464	478 bp downstream
Tssr161465	transcription start site region 161465	454 bp downstream
Tssr161466	transcription start site region 161466	425 bp downstream
Tssr161467	transcription start site region 161467	336 bp downstream
Tssr161468	transcription start site region 161468	265 bp downstream
Tssr163758	transcription start site region 163758	488 bp upstream
Tssr163759	transcription start site region 163759	374 bp upstream
Tssr163760	transcription start site region 163760	223 bp upstream
Tssr163761	transcription start site region 163761	23 bp downstream