rs230924793 SNP Detail

Summary

• ID
  rs230924793
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:122880548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGTTCC CACAGAAGCT
  AACAATCCCG CCCTGGGTCA TTTCAGCACT GAGAGCAGTG GGTATCCCAG CTCGAAGCGT
  GACTAACTTT GAGTCAGCCC ATGATACAGA AAAGAACCTC ACAGTAGACA TCTACCTGGA
  TGAATCGGGC AAGACAATTC CACATCTGAC CAAAGACTCT GTCTGGTAGG CTCCCTCCAG
  S
  TGGTCTCTTC TGTTCTCTTC TGTTCTGTTC TGTGGGCCTT GAAGCTTCTC TGCAGACTGG
  TTCAAATTGT GAGCAGTATC AACACCAGAA ACCCACTTTG CATAGTCAGC CTCATAGTGT
  GACCCATAAG TCCTGAGAAG GCTTGTTAAA CATAAATATC CCTGGAGGCA AAGGCCAAGA
  ATTGGTATTT ACTTCTGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323233190	CHEV_9_122960601	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230924793					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122880548 () rs orientation: forward

Symbol	Name	Function Class
Tgm4	transglutaminase 4 (prostate)	within coordinates
Tssr87884	transcription start site region 87884	279 bp downstream
Tssr87885	transcription start site region 87885	136 bp downstream
Tssr87886	transcription start site region 87886	1252 bp upstream
Tssr92118	transcription start site region 92118	38 bp upstream