rs230930418 SNP Detail

Summary

• ID
  rs230930418
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45571846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAACTATC ATTTATTCTC
  AGAGTTAGGG GCTGTGGGTG ATGAACTAGG ACTGATGAAG TTAGGGCTGG GGATCTGGAT
  GATGGTGCTA GAGCTGGGTG TGATGACCTA AGCCTGCAGG GGTGAGTGAC CAGCTGGCTT
  GGGGATTGCG AGACTGGGAG CTGGGTACCA CACAGCACAG CCTCTGCAGC ATCCATTGGC
  W
  GTGTGACCAT AGGCGTTACT GATGACGTCT CCACTATTTT CCTTCATCTG TAAAAGAGGG
  ATAGCATCGC GGCTAGCTTA GATCTAGAGC AGTGCCTGGT AATACTGTAC AACTTAGAGC
  GGGCTTTGGA GCCCCGAGTG GAGTCGAGGG AACTCTGGCT CTAGTAATTG GAGAAAGGGC
  AAAGACTTGA GGCCAGTGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371187865	MGP_WTSI_7_53177792	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230930418					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371187865	MGP_WTSI_7_53177792	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45571846 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	544 bp proximal
Cpgi19110	CpG island 19110	1544 bp proximal
Emp3	epithelial membrane protein 3	1018 bp upstream
Gm45442	predicted gene 45442	within coordinates
Odad1	outer dynein arm docking complex subunit 1	1650 bp upstream
Rr368318	regulatory region 368318	334 bp upstream
Rr368319	regulatory region 368319	554 bp upstream
Rr400324	regulatory region 400324	780 bp downstream
Rr400325	regulatory region 400325	935 bp upstream
Rr646609	regulatory region 646609	551 bp distal
Rr646610	regulatory region 646610	within coordinates
Rr646611	regulatory region 646611	760 bp proximal
Rr646612	regulatory region 646612	1844 bp proximal
Tssr2257	transcription start site region 2257	418 bp downstream
Tssr2258	transcription start site region 2258	1687 bp downstream
Tssr66661	transcription start site region 66661	779 bp upstream
Tssr66662	transcription start site region 66662	1112 bp upstream
Tssr66663	transcription start site region 66663	1780 bp upstream
Tssr72492	transcription start site region 72492	1786 bp upstream
Tssr72493	transcription start site region 72493	1754 bp upstream
Tssr72494	transcription start site region 72494	1744 bp upstream
Tssr72495	transcription start site region 72495	1728 bp upstream
Tssr72496	transcription start site region 72496	1642 bp upstream
Tssr72497	transcription start site region 72497	1539 bp upstream
Tssr72498	transcription start site region 72498	1295 bp upstream
Tssr72499	transcription start site region 72499	1110 bp upstream
Tssr72500	transcription start site region 72500	975 bp upstream
Tssr72501	transcription start site region 72501	766 bp downstream
Tssr72502	transcription start site region 72502	997 bp downstream