rs230931295 SNP Detail

Summary

• ID
  rs230931295
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118264967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGTGCT TTCTTCCCAC
  AAAATAACGT CGATACCTCT GCCTCCTAAC TATCCGAAGC CTGCCAGCAT GATAAACCTT
  AACCTCTGGC ATAACTGCGA GCTGAGCCTT CTCTTTCCCA GTCTCAGCCC CATCACCCAC
  CACTATGGTA AAAGCAGGCC CTTCAGTGTT AAAGGCACCT TGGGGCAAAT ACTGGCTCTG
  M
  ATGTTTCTCC ATTCCTGAAC AGGGAAAGCA AGAATGACAA TTTCCTGAGG ATTCTACCTG
  TGTTAGATAC TTAGAGAACT TAAACTTCCT GGATCCCACC CATTTGTGGA AGGAGGTTAA
  ATGCCCCACT AAATGTGACA CTTCACTTAC GCCTCTGCAA CACCTATTAT AATCCAATGT
  TCATTTAGTC CCCACAGCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321283059	CHEV_4_118080375	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230931295					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118264967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14683	CpG island 14683	1110 bp proximal
Med8	mediator complex subunit 8	1567 bp upstream
Rr398422	regulatory region 398422	1390 bp upstream
Rr598388	regulatory region 598388	1030 bp proximal
Rr598389	regulatory region 598389	1493 bp proximal
Rr598390	regulatory region 598390	1607 bp proximal
Szt2	SZT2 subunit of KICSTOR complex	within coordinates
Tssr1279	transcription start site region 1279	1615 bp upstream
Tssr38654	transcription start site region 38654	1561 bp upstream
Tssr43049	transcription start site region 43049	1449 bp downstream