rs230937085 SNP Detail

Summary

• ID
  rs230937085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101829603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATATTAC ATTAACTGGG
  AGAATTTATT GAGCGCTGAC TGTGCCCCAG ACTCTCTGCG GTGTCTTGAC AAACACTGTC
  CACTTCATCT GGTGCTGGAG GTGGGTACTA CCCTTCCTTA GAGTTCATAG AGGAAAGGGG
  TTCCACGTGA TCTTGTGGGG CTTGCCTGAG ATCCAAGTTG TAAGAATAAA TTCCCACCAG
  Y
  GTGGCTAAAC AGCCTTCCCA AAGTCCGTGG GCGTGGCGTC TGAGACAGAA GGGTATGATG
  TGGGGCTGCC AGGCATAGCC AGGTGTGATC TGTGCGTGGG ATTGATAGCC AGGATTTTAA
  TTCTCCCAGG CACCGTGCTT AGAGCTGGAT TTCCTGGCCT CTCAGCACCT CACCTCCAAC
  CCTTCCTGGT TTGCTAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323834282	CHEV_11_101800091	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230937085					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101829603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3890	CpG island 3890	1116 bp distal
Gm33662	predicted gene, 33662	792 bp upstream
Gm74450	predicted gene, 74450	within coordinates
Rpl27-ps2	ribosomal protein L27, pseudogene 2	724 bp upstream
Rr457131	regulatory region 457131	821 bp distal
Rr457132	regulatory region 457132	702 bp distal