rs230945939 SNP Detail

Summary

• ID
  rs230945939
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44390991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATTATA TAATAATCAC
  CATCTATCAG GAAGCCAGGC TGCTGGAGAG AGTGGGTAAG CCAGGATGCC CGGATCCGCG
  CCTCATCCAG GGCCCAGAAA GGTGTCTCCA TCAAGCCCGG ATCCGCGCCT CATCCAGGGC
  CCAGAAAGGT GTCTCCATCA AGCTACGCAC AGTGTGGGGC AAAGCCCAGT GGTCGGATGA
  M
  GATGATGATG GTGACAGGAG GGGGATTCCA GGGACTAGTG ACTAGTGAGG GGCTCTGGGC
  AATCTGACTG CAGCCTCGAA AACCCCACCC TCAGAACTCT GACAGGCAGT GCCCCGAGCC
  AATGATTGAA GTTACTGTGG GGCTTGAAGT TAACCCTTTC TTGGGTCCTC AGAATATTGA
  GCCTCTTCCA CATAACTTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377411546	MGP_WTSI_9_44287777	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	C	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230945939					SNP	C	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	C	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377411546	MGP_WTSI_9_44287777	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44390991 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	960 bp distal
Cpgi21660	CpG island 21660	201 bp distal
Cpgi21661	CpG island 21661	213 bp proximal
Gm10023	predicted gene 10023	within coordinates
Gm47204	predicted gene, 47204	within coordinates
Gm47205	predicted gene, 47205	1820 bp downstream
Rr368728	regulatory region 368728	382 bp upstream
Rr677665	regulatory region 677665	1225 bp distal
Rr677666	regulatory region 677666	1700 bp distal
Rr677667	regulatory region 677667	within coordinates
Rr677668	regulatory region 677668	311 bp distal
Rr677669	regulatory region 677669	93 bp proximal
Rr677670	regulatory region 677670	556 bp proximal
Tssr89164	transcription start site region 89164	30 bp downstream
Tssr89165	transcription start site region 89165	58 bp downstream