rs230953642 SNP Detail

Summary

• ID
  rs230953642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47449840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAACAAAACT
  GCCCGAGAGC CCTCCTGAAC TCTTTCAATT ATTGGGCACC AGTGTATTAT ATATCAGTGC
  TCAAACTGTG TAGCAGTGTA TCTCTCTTCT TTGTCAACTT CAACCAGATT TGGGGTATCT
  TCACCCACAC CACAGGCTGG AAGTCCGTCC GTTAGCCCCA GTGCTGTGAC TAGGTAACCC
  R
  CCTGCTTCTC TGTCATCCCC TTATCTGTTA AGTAAAAGGT TGCACCAGAT GAGCCATCTG
  CCCCCGGCCA GCTCCACAAG GCCACAACAT ATAGCACACT CCGTTCATTG TTTTCTAGAA
  CTCTGCGTGA TCCCATCTGC TAGGTGACGT CACTCTCCGC CCCAAGAATC ACATCATCCA
  TTCATTCTCA CACGGAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325826243	CHEV_19_47535891	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230953642					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47449840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11031	CpG island 11031	1998 bp proximal
Gm52384	predicted gene, 52384	1678 bp downstream
Rr549061	regulatory region 549061	457 bp distal
Rr549062	regulatory region 549062	547 bp distal
Rr549063	regulatory region 549063	40 bp proximal
Rr549064	regulatory region 549064	629 bp proximal
Rr549065	regulatory region 549065	1766 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	778 bp upstream
Tssr159730	transcription start site region 159730	634 bp upstream