rs230953648 SNP Detail

Summary

• ID
  rs230953648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82423256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCATCT ATTCATTTTA
  CAGTCATCTG AGCCCAGCGA TGCGATCAAT CAGGACGGGG CACTGCGCCG GTTCACCGCA
  ACTTCGCAAC AAACCCAGTC CTCCTTAAAT AGCCAAAGAT TCAAGTTCAC TCGGCGAGCT
  AGATTTCCCG GGGTGAAATC CAATCTACAC TTTTAACCCT CTTGCGGTTC GCGCGCGCCG
  R
  CCGAGCTCTC CGAGGCTGCC GCCGCTGGTG CAGGCTGCTG GTCGCCTGGT TTAGGGGATT
  TGTTTTCTGT TTTGCAGTTG TTGTTGTTGT TGTTTGTTGT TGGGGGTTGG GGTGCGCGAG
  GGTTCGGTGT GGGTTGGATT GGGGTGATGG TGGGTGGTGA AATGTTTTTT TTAAAAAAAG
  GCGGGGAGGG GGGCGCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362190665	MGP_WTSI_4_82150923	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230953648					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362190665	MGP_WTSI_4_82150923	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82423256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14398	CpG island 14398	within coordinates
Gm57123	predicted gene, 57123	764 bp downstream
Nfib	nuclear factor I/B	within coordinates
Rr594356	regulatory region 594356	1873 bp distal
Rr594357	regulatory region 594357	within coordinates
Rr594358	regulatory region 594358	279 bp proximal
Tssr37680	transcription start site region 37680	904 bp upstream
Tssr42247	transcription start site region 42247	121 bp upstream
Tssr42248	transcription start site region 42248	203 bp downstream
Tssr42249	transcription start site region 42249	225 bp downstream
Tssr42250	transcription start site region 42250	255 bp downstream
Tssr42251	transcription start site region 42251	351 bp downstream
Tssr42252	transcription start site region 42252	577 bp downstream
Tssr42253	transcription start site region 42253	660 bp downstream
Tssr42254	transcription start site region 42254	699 bp downstream
Tssr42255	transcription start site region 42255	730 bp downstream
Tssr42256	transcription start site region 42256	784 bp downstream
Tssr42257	transcription start site region 42257	814 bp downstream
Tssr42258	transcription start site region 42258	839 bp downstream
Tssr42259	transcription start site region 42259	1413 bp downstream