rs230953755 SNP Detail

Summary

• ID
  rs230953755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62485888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGAACT CTCAAATGTA
  AATTCCAAAT TTAGTACGTT CTACAAAAAC AGAAAAACGA GAGTTGGGAA TAGAGCTCAA
  CGCTGGGCAT TTGTCGGGCA TAGTGGTGGC CTCACTTCAA TGCCCACTGG GAAGGTGACA
  TAAAAGGGTG GCTAGAATTT AAAATTTACC TTCGTGGTAG GTCCTAGGGG GTGTTTCCTC
  R
  TCTCTAGCAC TCTACAGAGT AAATATTTTA TCAAGTGTCA TCTTTCCCAC AGTCATTTTC
  ATCCTCATTC AGCTTTCTTT CTCCAGGTCA AATGTCTCCA GTAAAAATTT TACCTCTGCA
  TTTTTTCTTA ACACCATAAG ATCCTCTATT TTTCGGGTTC TTTCTTTCTT TCTTTCTTTC
  TTTCTTTCTT TCTTTCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380622831	MGP_WTSI_10_62112857	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230953755					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380622831	MGP_WTSI_10_62112857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62485888 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1632	CpG island 1632	462 bp proximal
Ddx50	DExD box helicase 50	within coordinates
Gm66017	predicted gene, 66017	1546 bp upstream
Rr369004	regulatory region 369004	1267 bp upstream
Rr432661	regulatory region 432661	183 bp proximal
Rr432662	regulatory region 432662	1099 bp proximal
Rr432663	regulatory region 432663	1557 bp proximal
Tssr93725	transcription start site region 93725	1557 bp upstream
Tssr93726	transcription start site region 93726	1578 bp upstream
Tssr93727	transcription start site region 93727	1603 bp upstream
Tssr97868	transcription start site region 97868	1061 bp downstream
Tssr97869	transcription start site region 97869	1085 bp downstream