rs230954317 SNP Detail

Summary

• ID
  rs230954317
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87054701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCCATC TCTGAAGGAT
  ATGACAGAGG CGGCCGTGAA AGTGCTAAGC AGGAACCCCA AAGGCTTTTA TCTCTTTGTG
  GAGGGTGAGT CTCCAAGCTC CCATGGAAAG AGGGGACAAT GGACAGGGAC AGGCTCAAGC
  TCACTGGCTT CCTGCAGGGG GCCGAATCGA CCGTGGTCAC CATCTGGGCA CAGCTTATCT
  K
  GCGCTGACTG AGGCTGTGAT GTTCGACTTA GCCATCGAGA GGGCCAGCCA GCTCACTAGT
  GAACGCGACA CTCTGACCAT AGTCACTGCT GACCACTCCC ATGTCTTCTC CTTTGGTGGC
  TACACACTTC GAGGGACCTC CATCTTCGGT AGGTTCGGGA ACAGTGGCAG GCTGTCAATT
  ACGTACAGAA TACTTCTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350380321	MGP_WTSI_1_89023554	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230954317					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350380321	MGP_WTSI_1_89023554	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87054701 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	within coordinates
Cpgi518	CpG island 518	131 bp proximal
Rr17963	regulatory region 17963	within coordinates
Tssr145	transcription start site region 145	627 bp downstream
Tssr146	transcription start site region 146	609 bp upstream
Tssr147	transcription start site region 147	961 bp downstream
Tssr148	transcription start site region 148	1623 bp upstream
Tssr7782	transcription start site region 7782	1576 bp downstream
Tssr7783	transcription start site region 7783	1283 bp downstream
Tssr7784	transcription start site region 7784	1041 bp downstream
Tssr7785	transcription start site region 7785	1002 bp downstream
Tssr7786	transcription start site region 7786	975 bp downstream
Tssr7787	transcription start site region 7787	646 bp downstream
Tssr7788	transcription start site region 7788	248 bp downstream
Tssr7789	transcription start site region 7789	214 bp downstream
Tssr7790	transcription start site region 7790	161 bp downstream
Tssr7791	transcription start site region 7791	34 bp downstream
Tssr7792	transcription start site region 7792	8 bp downstream
Tssr7793	transcription start site region 7793	within coordinates
Tssr7794	transcription start site region 7794	12 bp upstream
Tssr7795	transcription start site region 7795	38 bp upstream
Tssr7796	transcription start site region 7796	61 bp upstream
Tssr7797	transcription start site region 7797	78 bp upstream
Tssr7798	transcription start site region 7798	115 bp upstream
Tssr7799	transcription start site region 7799	351 bp upstream
Tssr7800	transcription start site region 7800	370 bp upstream
Tssr7801	transcription start site region 7801	429 bp upstream
Tssr7802	transcription start site region 7802	556 bp upstream
Tssr7803	transcription start site region 7803	617 bp upstream
Tssr7804	transcription start site region 7804	641 bp upstream
Tssr7805	transcription start site region 7805	715 bp upstream
Tssr7806	transcription start site region 7806	729 bp upstream
Tssr7807	transcription start site region 7807	749 bp upstream
Tssr7808	transcription start site region 7808	854 bp upstream
Tssr7809	transcription start site region 7809	924 bp upstream
Tssr7810	transcription start site region 7810	949 bp upstream
Tssr7811	transcription start site region 7811	978 bp upstream
Tssr7812	transcription start site region 7812	1028 bp upstream
Tssr7813	transcription start site region 7813	1069 bp upstream
Tssr7814	transcription start site region 7814	1099 bp upstream
Tssr7815	transcription start site region 7815	1167 bp upstream
Tssr7816	transcription start site region 7816	1207 bp upstream
Tssr7817	transcription start site region 7817	1219 bp upstream
Tssr7818	transcription start site region 7818	1394 bp upstream
Tssr7819	transcription start site region 7819	1710 bp upstream
Tssr12838	transcription start site region 12838	1249 bp upstream
Tssr12839	transcription start site region 12839	1239 bp upstream
Tssr12840	transcription start site region 12840	1230 bp upstream
Tssr12841	transcription start site region 12841	171 bp upstream
Tssr12842	transcription start site region 12842	145 bp downstream
Tssr12843	transcription start site region 12843	407 bp downstream
Tssr12844	transcription start site region 12844	598 bp downstream
Tssr12845	transcription start site region 12845	769 bp downstream
Tssr12846	transcription start site region 12846	830 bp downstream
Tssr12847	transcription start site region 12847	1301 bp downstream
Tssr12848	transcription start site region 12848	1370 bp downstream
Tssr12849	transcription start site region 12849	1389 bp downstream