rs230957572 SNP Detail

Summary

• ID
  rs230957572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17464775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTGTTT CTGGGATGGT
  CTGAATTTTT TATTCCTGGC AAACACACGG AGGGTGTGAT CCATCATTTT CTATCCCACT
  TTATCTTTTT TTTTTCCTGG GACTCAGTGG AGGTGAAATA CATTATAACC AGAGGTCAGG
  TAGTCTGGCT AGTAGCGGTG TAATTATTAA AAGACCAAAG AAAGTACAAT GCAGAATTTA
  Y
  TCCAAACTGT GGTTTCCCAT TTCCTACCTT TTTATGTTTA GAAGAGCCAT TTGCTAATTT
  GGCAGTTGGC AGGGGTTCTA GGGGCTCACG CATGAATGCT CGTCCAGTGG CTTTTCCCTT
  ATCACAGGCT TCTGTTCAAA GCAGCTCTGG GGCAGAATGA AAAATTGTCA ACTTTCTTAA
  GCAAAATAAT CAGGAGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367526422	MGP_WTSI_6_17414776	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230957572					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367526422	MGP_WTSI_6_17414776	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17464775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	282 bp distal
Met	met proto-oncogene	Intron
Rr626799	regulatory region 626799	728 bp distal
Rr626800	regulatory region 626800	1281 bp distal
Rr626801	regulatory region 626801	1238 bp distal
Rr626802	regulatory region 626802	within coordinates
Tssr55050	transcription start site region 55050	1334 bp downstream
Tssr55051	transcription start site region 55051	1195 bp downstream
Tssr55052	transcription start site region 55052	967 bp downstream
Tssr55053	transcription start site region 55053	947 bp downstream
Tssr55054	transcription start site region 55054	878 bp downstream
Tssr55055	transcription start site region 55055	870 bp downstream
Tssr55056	transcription start site region 55056	705 bp downstream
Tssr55057	transcription start site region 55057	663 bp downstream
Tssr55058	transcription start site region 55058	627 bp downstream
Tssr55059	transcription start site region 55059	602 bp downstream