rs230957711 SNP Detail

Summary

• ID
  rs230957711
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:31122365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCAACCAC CTGGGACCCT
  AGACGACTTC ACCAGGTTAA CGGGGGTGAC CTCTGGTGCA GAACAATCAC TGTGACCCTG
  ACCCACGTAA AGTACCCCCT GAAGCTTTCC AAATGTACTG GTGGATAGCT TCAACGTCCC
  CTGGGAGGAG GAAAGCCGGG CTCCCTAGTT TGCCAGACTT GTGCAAACGA CTGGGAGGCA
  R
  GGGAGGGCGC AGAGCGCCCC GCTGCCCTGG CGGCGCCTCC TCTCCCCGCT CCCTCGGCAT
  CTCGGCCACT CGCCAGGGCT GGAGCCGCAT CCCCGCTGCC AAGTCCACCT GGTCAACGAC
  TGCTGCGCGC CGACCGTCAA GGTGCGAGCC CGAAGCCCAG GCCCCCGACC GCTGCGGGCA
  CCGGGGACCC GGTGCAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889596	CHEV_9_31018654	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230957711					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31122365 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	Intron
Gm69111	predicted gene, 69111	955 bp upstream
Rr401293	regulatory region 401293	653 bp upstream
Rr675968	regulatory region 675968	within coordinates
Rr675969	regulatory region 675969	137 bp distal
Rr675970	regulatory region 675970	708 bp proximal
Rr675971	regulatory region 675971	922 bp proximal
Rr675972	regulatory region 675972	966 bp proximal
Tssr84218	transcription start site region 84218	265 bp upstream
Tssr88644	transcription start site region 88644	1455 bp upstream
Tssr88645	transcription start site region 88645	736 bp downstream