rs230957877 SNP Detail

Summary

• ID
  rs230957877
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:175794612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGTGCTT CACAGAGAAC
  TATTGGAGCT GAAGTTCAAA GCCAAATTTA AGTCCAGAGG CTGCATTTCA CCTTTGACCC
  TAAAGGCATC CTCTGCCCAC TTCACCCTGA ACAATGACTT CAGCTCAGGG TCTGGGGCAT
  TGAAGCAGCC ATACTGAGAT TTCTGCTCTA TGCACTGGCG GATGAAATTT TCTGGAGGAA
  W
  CACATATAGG TAAATACTAA AGGGGCATCC CTGGGAAGAG AAAGGAGGAT GGAGGCGGGT
  GAGGAGTTTG GGGCCTTAGC CTGTAAATCT AGCCTTTGCC CTGCCATACA GAGAATGAGC
  CAAAAGCATG GTGTTTGTGG ATTGCAAATG CCTTAGTTGG CTTCTTTCAT GACAGCTCTG
  GGAAGCATCA TGCTGACACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320153315	CHEV_1_177897177	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230957877					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175794612 () rs orientation: forward

Symbol	Name	Function Class
Pld5	phospholipase D family member 5	Intron
Rr423867	regulatory region 423867	1715 bp distal
Rr423868	regulatory region 423868	411 bp distal