rs230961107 SNP Detail

Summary

• ID
  rs230961107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96139603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTTGGT CCTTAGAAAG
  TGCAGCAAAT GCTCCTATCT ATCACTGAGT CGGCCTGGCC CCCGTCCATT GAATGTTAAT
  AGATTGCCCA AGTACAGTAA GTACCCTCAC TGCTGTACTT TAAGGTATAA GAATGAAAAG
  ATTCAGAGTT CTATAGGTTG TAGTTTCAAT TTTTTAAAAC ATGTTTACAA GACAAGTTAA
  Y
  TCATACCCTG TATCATATCA TTGTTGGCAC ACGTCTGTAT TTTAGTGTAT TATGTGTTAG
  CAAAAGACAA GTTCGAATAA GAAGAGTTAT CTAGTCTCTT TCAGTCAGTA TTGATTGGAA
  TGTCAGACAG GTAGTGTCTA AGATGCTGAG GATACAGTAC TAAAAGCAAA GCACAAAAGT
  CTTGCCCTGT TGTCAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107354	CHEV_9_96157969	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230961107					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96139603 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1670 bp upstream
Tssr86589	transcription start site region 86589	1147 bp upstream
Tssr86590	transcription start site region 86590	1164 bp upstream
Tssr86591	transcription start site region 86591	1178 bp upstream
Tssr86592	transcription start site region 86592	1241 bp upstream
Tssr86593	transcription start site region 86593	1256 bp upstream
Tssr86594	transcription start site region 86594	1458 bp upstream
Tssr86595	transcription start site region 86595	1696 bp upstream
Tssr86596	transcription start site region 86596	1720 bp upstream