rs230962504 SNP Detail

Summary

• ID
  rs230962504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116355479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTGAGG GCCTATAAAA
  CCTGGGACCC CTGTCCCCTC GGGGTTGACT CCTCTACCCC TGCGTGAGAT ATGAGTCGTC
  CCCAGAGCTC TGGTTTTCCC GAATAAAGCC TCCTGTGGTT TGCATCAAGT TTGGTCTCTC
  ATGAGTTCTT GGGGGTCCAC TATTATCCCG AGACTTGAGT GAGGGACTCC CTTCGGAGGT
  Y
  TTTCAGTTTT ACCTCTTATA TTTTATCTGT GTACAGATGT GTACAGATTT TTAAAAGCTA
  AGAGTATAAT TGTCTTTTTT GGTGTGAGAG GTTTCAAGAC ACTGTTTCTC TGTGTAGCTT
  TGGCTGTCCT AGAACTAGCT CTGTAGACCA GGCTGGTCTC AAACTCAAAG AGATCTGCCT
  GTGTCTGCTT CCCTGGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359355967	MGP_WTSI_3_116264748	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230962504					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359355967	MGP_WTSI_3_116264748	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116355479 () rs orientation: forward

Symbol	Name	Function Class
Gm9761	predicted gene 9761	404 bp upstream
Gm65478	predicted gene, 65478	within coordinates
Lrrc39	leucine rich repeat containing 39	1143 bp upstream
Rr583740	regulatory region 583740	658 bp proximal
Rr583741	regulatory region 583741	1159 bp proximal
Rr583742	regulatory region 583742	1574 bp proximal
Tssr31355	transcription start site region 31355	1113 bp upstream
Tssr31356	transcription start site region 31356	1135 bp upstream
Tssr31357	transcription start site region 31357	1178 bp upstream
Tssr31358	transcription start site region 31358	1221 bp upstream
Tssr31359	transcription start site region 31359	1234 bp upstream
Tssr35315	transcription start site region 35315	287 bp upstream