rs230968090 SNP Detail

Summary

• ID
  rs230968090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71576246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAT GTCCACTCTG GACTCTCAGA
  Y
  ATCCCAGTTC CTGCCCCTGG CTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320340050	CHEV_2_71583959	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230968090					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71576246 () rs orientation: forward

Symbol	Name	Function Class
Gm13647	predicted gene 13647	505 bp downstream
Gm13663	predicted gene 13663	1605 bp upstream
Gm17250	predicted gene, 17250	within coordinates
Gm74659	predicted gene, 74659	within coordinates
Rr62438	regulatory region 62438	within coordinates
Rr373341	regulatory region 373341	within coordinates
Tssr18283	transcription start site region 18283	41 bp downstream
Tssr24495	transcription start site region 24495	130 bp upstream