rs230968444 SNP Detail

Summary

• ID
  rs230968444
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70701958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTGAACT ATATGTTTTA
  ATGGCCACGG TTTTGTAAGA CATTTGGTCC TTTGTTTTCC CAGTTATTAC TCGATTGTAA
  TTTTATATCG CCAGCAATGG ACTGAAACGG TCCGCAACCT CTTCTTTACA ACTGGGTGAC
  CTCGCGGCTG TGCCAGCCAT TTGGCGTTCA CCCTGCCGCT AAGGGCCATG TGAACCCCCG
  M
  GGTAGCATCC CTTGCTCCGC GTGGACCACT TTCCTGAGGC ACAGTGATAG GAACAGAGCC
  ACTAATCTGA AGAGAACAGA GATGTGACAG ACTACACTAA TGTGAGAAAA ACAAGGAAAG
  GGTGACTTAT TGGAGATTTC AGAAATAAAA TGCATTTATT ATTATATTCC CTTATTTTAA
  TTTTCTATTA GGGAATTAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815787	CHEV_6_70674968	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230968444					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70701958 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1472 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1461 bp upstream
Igkj3	immunoglobulin kappa joining 3	1714 bp downstream
Igkj4	immunoglobulin kappa joining 4	1389 bp downstream
Igkj5	immunoglobulin kappa joining 5	1051 bp downstream
Rr158	regulatory region 158	977 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	161 bp upstream
Rr399685	regulatory region 399685	573 bp upstream
Rr399686	regulatory region 399686	1537 bp upstream
Tssr1880	transcription start site region 1880	1876 bp upstream
Tssr56953	transcription start site region 56953	1427 bp downstream
Tssr56954	transcription start site region 56954	1295 bp downstream
Tssr56955	transcription start site region 56955	1074 bp downstream
Tssr56956	transcription start site region 56956	834 bp upstream
Tssr56957	transcription start site region 56957	1456 bp upstream
Tssr56958	transcription start site region 56958	1503 bp upstream
Tssr56959	transcription start site region 56959	1521 bp upstream
Tssr56960	transcription start site region 56960	1544 bp upstream
Tssr56961	transcription start site region 56961	1558 bp upstream
Tssr56962	transcription start site region 56962	1566 bp upstream
Tssr56963	transcription start site region 56963	1615 bp upstream
Tssr56964	transcription start site region 56964	1630 bp upstream
Tssr56965	transcription start site region 56965	1636 bp upstream
Tssr56966	transcription start site region 56966	1647 bp upstream
Tssr56967	transcription start site region 56967	1662 bp upstream
Tssr56968	transcription start site region 56968	1686 bp upstream
Tssr56969	transcription start site region 56969	1722 bp upstream
Tssr56970	transcription start site region 56970	1735 bp upstream
Tssr56971	transcription start site region 56971	1755 bp upstream
Tssr56972	transcription start site region 56972	1781 bp upstream
Tssr56973	transcription start site region 56973	1819 bp upstream
Tssr56974	transcription start site region 56974	1851 bp upstream
Tssr56975	transcription start site region 56975	1884 bp upstream
Tssr61321	transcription start site region 61321	1508 bp downstream
Tssr61322	transcription start site region 61322	1673 bp downstream
Tssr61323	transcription start site region 61323	1688 bp downstream
Tssr61324	transcription start site region 61324	1778 bp downstream
Tssr61325	transcription start site region 61325	1844 bp downstream
Tssr61326	transcription start site region 61326	1879 bp downstream
Tssr61327	transcription start site region 61327	1893 bp downstream
Tssr61328	transcription start site region 61328	1984 bp downstream