rs230983286 SNP Detail

Summary

• ID
  rs230983286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128583185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGTCATT TTGAGACTTG
  AATTGAAAGG AGAGAGGTTA AAGCTGGGAG AATTGCAAGG AGGACAATGT GTGAGCTTTT
  GAAAACTTAG TTGAGGTTCT TATTAGCCTG TTTTGTTTCT TTTTTTTTTT TTTTTTTTTC
  CTTTTGGTTT TTTTTTTTTT TTTTTTTTTT GGTTTTTCGA GACAGGGTTT CTCTGTGTAG
  Y
  CCTGGCTGTC CTGGAACTCA CTCTGTAGAC CAGACTGGCC TCGAACTCAG AAATCCTCCT
  CCCTCTGCCT CCACTGGGAT TAAAGGCGTG CGCCACCACT GCTCGGTTGT TTTGTTTTAA
  AGTAGAACAT ATTGTCTACT ACTGAAGTAC TAATATTTCC CCACTTCTCA ATTTGAGAGG
  CACTGTTGGA CGTTAGTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323535820	CHEV_10_128184372	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230983286					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128583185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	386 bp proximal
Gm31504	predicted gene, 31504	1434 bp downstream
Gm66065	predicted gene, 66065	967 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	573 bp upstream
Rr224483	regulatory region 224483	984 bp distal
Rr224484	regulatory region 224484	15 bp proximal
Rr385481	regulatory region 385481	9 bp upstream
Tssr96443	transcription start site region 96443	842 bp downstream
Tssr96444	transcription start site region 96444	472 bp upstream
Tssr96445	transcription start site region 96445	534 bp upstream
Tssr96446	transcription start site region 96446	1185 bp upstream
Tssr96447	transcription start site region 96447	1435 bp upstream
Tssr99954	transcription start site region 99954	1850 bp upstream
Tssr99955	transcription start site region 99955	1817 bp upstream
Tssr99956	transcription start site region 99956	1064 bp upstream
Tssr99957	transcription start site region 99957	1004 bp upstream
Tssr99958	transcription start site region 99958	312 bp downstream
Tssr99959	transcription start site region 99959	404 bp downstream