rs230989566 SNP Detail

Summary

• ID
  rs230989566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139338169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAGTGGGG GACAGAATAG ACATGGCTCT
  GACTGTGACA CTGGAACCTG AGGAGACATG GAGGGATGGA TGTAGGTATC TTGGAAGCCT
  GACCTCGCCT GGCCCAGGCT TGGATAACCT GTGACCAAAA CGTCTTGGCT CTGTACTGCC
  R
  ACAGAGGTCC TTTCAGCCCC CAACCCAGGC CCCCTGCCAC AGAGGAGACC CCACATTCCA
  CATAACCTGT AGCTTTAAGC CTCCTGTTGG GCTGTCTCCT GCAAACTGCT CATTCCACAT
  TCTCGGGGTG GTGGGGTGGG TGGGGTGCCG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704306	CHEV_5_139828368	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230989566					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139338169 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	203 bp upstream
Rr623254	regulatory region 623254	1007 bp distal
Rr623255	regulatory region 623255	506 bp distal
Rr623256	regulatory region 623256	within coordinates
Rr623257	regulatory region 623257	1282 bp proximal
Tssr49499	transcription start site region 49499	193 bp upstream
Tssr49500	transcription start site region 49500	1795 bp upstream
Tssr49501	transcription start site region 49501	1827 bp upstream