rs230989852 SNP Detail

Summary

• ID
  rs230989852
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCTTGAAG TCAGGTCCCT TGGATTCACC
  CAGTCTCCAG CGGGTACTCC CTTGCTTAAG CCAAAATGTC AACCAAAATA CAATTGGATA
  ACACTGcagc tcaccccagc tcaccccagc tcacTTCTCA CTTTGTGTTC CCATCCTTTT
  M
  AAATGTTGTA CAGTATCCTT CCTGGGACAT GTTTCAGGTC CTGAACTGGC TGCCTTCCTG
  AGCGCTCAGA GAATAAAGCT TTCATTTTTA AGCTTCCTGA GTCTGAAATA AGTTTTCTCG
  GCTTGTACCT CGAACCCAAC AGTAAGAATC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104738	CHEV_12_77354910	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230989852					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	964 bp proximal
Gm47525	predicted gene, 47525	252 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1375 bp upstream
Rr403350	regulatory region 403350	1122 bp upstream
Rr468112	regulatory region 468112	885 bp proximal
Rr468113	regulatory region 468113	1804 bp proximal
Tssr113934	transcription start site region 113934	1286 bp upstream
Tssr113935	transcription start site region 113935	1321 bp upstream
Tssr113936	transcription start site region 113936	1367 bp upstream
Tssr113937	transcription start site region 113937	1409 bp upstream
Tssr113938	transcription start site region 113938	1425 bp upstream
Tssr113939	transcription start site region 113939	1448 bp upstream
Tssr113940	transcription start site region 113940	1530 bp upstream
Tssr113941	transcription start site region 113941	1560 bp upstream
Tssr116711	transcription start site region 116711	1123 bp downstream
Tssr116712	transcription start site region 116712	1149 bp downstream