rs230990079 SNP Detail

Summary

• ID
  rs230990079
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10582487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGATTGCA CTAGTCACCT
  GGGTGTTTAG GCTCTTCCTG TGAAATTCCT GCGTTGTATT TGAGCTTAGA ATTTGTATCG
  CAGTAGAGGC ACTAATAGTG CTATCAAGTA ATTTAGTGGA GAGTCCTTTC GTTTCTGGAG
  AAATTAAAAG AGGTGAGCAA ACACACCCCC AGGTGATGTG TGAGGCTGGG ATGATTGTTC
  K
  AAAGTCAGTT GAGGGCATTC GAGGGATCAG GAGGAGCTCG AAGAATTAAG CAAAGGAAAG
  CACGATTCTA CTCTGGGATG TGCACAGATG GTCACCTCTT ATCCCCAGTC TAGTCCTCCG
  CAGCCCTTCC TGTTTTAAAA GAGGGAAAAC CCCGAGGACG CCTGGAGCTA TGGAGGAAGG
  AAGGAGGCAG AATCTGAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401732821	MGP_WTSI_19_10679613	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230990079					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401732821	MGP_WTSI_19_10679613	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10582487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10615	CpG island 10615	109 bp proximal
Ddb1	damage specific DNA binding protein 1	474 bp upstream
Gm59162	predicted gene, 59162	1378 bp downstream
Rr362968	regulatory region 362968	within coordinates
Rr405857	regulatory region 405857	232 bp upstream
Tkfc	triokinase, FMN cyclase	within coordinates
Tssr155068	transcription start site region 155068	416 bp upstream
Tssr155069	transcription start site region 155069	433 bp upstream
Tssr155070	transcription start site region 155070	504 bp upstream
Tssr155071	transcription start site region 155071	561 bp upstream
Tssr155072	transcription start site region 155072	796 bp upstream
Tssr155073	transcription start site region 155073	1150 bp upstream
Tssr158200	transcription start site region 158200	808 bp upstream
Tssr158201	transcription start site region 158201	786 bp upstream
Tssr158202	transcription start site region 158202	756 bp upstream
Tssr158203	transcription start site region 158203	726 bp upstream
Tssr158204	transcription start site region 158204	242 bp downstream
Tssr158205	transcription start site region 158205	287 bp downstream
Tssr158206	transcription start site region 158206	344 bp downstream
Tssr158207	transcription start site region 158207	745 bp downstream