rs230990786 SNP Detail

Summary

• ID
  rs230990786
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:73349599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG TGTGTGTGTG GGGGGTGTGG
  K
  GGGGGGGTAG TGACCACTTT ACCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/2J	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
ss403782941	MGP_WTSI_X_71551332	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	T	G	T	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	T	G	T	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/2J	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
rs230990786					SNP	G	G	G	G	T	G	T	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403782941	MGP_WTSI_X_71551332	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73349599 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6ap1	ATPase, H+ transporting, lysosomal accessory protein 1			1302 bp downstream
Cpgi22795	CpG island 22795			409 bp distal
Gdi1	GDP dissociation inhibitor 1			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr692006	regulatory region 692006			985 bp distal
Rr692007	regulatory region 692007			within coordinates
Tssr161330	transcription start site region 161330			1957 bp downstream
Tssr161331	transcription start site region 161331			1822 bp downstream
Tssr161332	transcription start site region 161332			1802 bp downstream
Tssr161333	transcription start site region 161333			957 bp downstream
Tssr161334	transcription start site region 161334			887 bp downstream
Tssr161335	transcription start site region 161335			715 bp downstream
Tssr161336	transcription start site region 161336			1190 bp upstream
Tssr163632	transcription start site region 163632			1302 bp upstream