rs230994250 SNP Detail

Summary

• ID
  rs230994250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93019146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCAGGAT GGATTGGGGT
  CCCGTGTAGT GCGCAGAAAA TATTACGCGC ACCATCCTCG GGGCACAGCG AGGCCAGCCG
  CTCGCTTCGG CTCCCCTTTC GTCGCCTTCT TGCATCCTGG ATGGAGCGGG CTTCTCCTCC
  TGCCTGTGAG GTGGAGGAGC AGGGATAGGC CCAGGACCCA CTCCCACTTT GACCCAAAGC
  Y
  TTACAAGCAC ACGGCCAAGG CCTCCTCAAA GTCCCCCAGC ACGGACTTCC TGTTTCGTTT
  CTTTTAGAAA AACTTTCTGG ATGGGGCCTG GAGAGAGTGT AGAAGTCCCT GGGTTGCAGG
  GACACCCACC CAGCTGTGTC TCCCGTCTGG AGGCTCCTGG AGAAAGGCCG CCACCTGCCG
  CCGGCGGGAT TGGTGGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354848775	MGP_WTSI_2_93028958	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230994250					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354848775	MGP_WTSI_2_93028958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93019146 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11943	CpG island 11943			within coordinates
Rr561109	regulatory region 561109			1207 bp distal
Rr561110	regulatory region 561110			1363 bp distal
Rr561111	regulatory region 561111			within coordinates
Rr561112	regulatory region 561112			165 bp proximal
Rr561113	regulatory region 561113			381 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11			Intron
				Noncoding-Transcript-Variant
Tssr18978	transcription start site region 18978			1993 bp downstream
Tssr18979	transcription start site region 18979			1248 bp downstream
Tssr18980	transcription start site region 18980			1231 bp downstream
Tssr18981	transcription start site region 18981			1160 bp downstream
Tssr18982	transcription start site region 18982			1018 bp downstream