rs230995644 SNP Detail

Summary

• ID
  rs230995644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80863098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGAC CGGAGTCGAG GCGCTCGCTC
  Y
  GTCAGCGAGC GGGTCCCCAG CTCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322284542	CHEV_7_88358236	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230995644					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80863098 () rs orientation: forward

Symbol	Name	Function Class
1700023D08Rik	RIKEN cDNA 1700023D08 gene	177 bp upstream
Cpgi19350	CpG island 19350	within coordinates
Gm73624	predicted gene, 73624	within coordinates
Pde8a	phosphodiesterase 8A	246 bp upstream
Tssr67494	transcription start site region 67494	66 bp downstream
Tssr67495	transcription start site region 67495	28 bp downstream
Tssr67496	transcription start site region 67496	8 bp downstream
Tssr67497	transcription start site region 67497	within coordinates
Tssr67498	transcription start site region 67498	144 bp upstream
Tssr67499	transcription start site region 67499	217 bp upstream
Tssr67500	transcription start site region 67500	401 bp upstream
Tssr67501	transcription start site region 67501	427 bp upstream
Tssr67502	transcription start site region 67502	695 bp upstream
Tssr73321	transcription start site region 73321	190 bp upstream
Tssr73322	transcription start site region 73322	137 bp upstream
Tssr73323	transcription start site region 73323	301 bp downstream
Tssr73324	transcription start site region 73324	325 bp downstream